Stem-loop sequence ptc-MIR399j

AccessionMI0002347 (change log)
DescriptionPopulus trichocarpa miR399j stem-loop
Gene family MIPF0000015; MIR399
Literature search

4 open access papers mention ptc-MIR399j
(9 sentences)

Stem-loop 
   --------   auuaca       ac    a        ca  -    --    c      uu 
5'         ugc      gggcaag  cucc uuggcagg  gc cacu  aaag augcau  a
           |||      |||||||  |||| ||||||||  || ||||  |||| ||||||  a
3'         acg      ccuguuu  gagg aaccgucu  cg guga  uuuc ugcgua  a
   ucuucuaa   -----g       -a    a        cc  u    au    u      uu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000347.2: 7754550-7754661 [+]
intergenic
Database links

Mature sequence ptc-miR399j

Accession MIMAT0002053
Sequence

82 -  

ugccaaaggagauuuguccgg

 - 102

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Evidence by similarity; MI0001020

References

1
PMID:16973872 "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)" Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm Science. 313:1596-1604(2006).