Stem-loop sequence ptc-MIR477e

AccessionMI0002356 (change log)
DescriptionPopulus trichocarpa miR477e stem-loop
Gene family MIPF0000216; MIR477
Literature search

1 open access papers mention ptc-MIR477e
(1 sentences)

Stem-loop 
   a   uu             -      c  c  aauaac    ua    -   gu 
5'  uug  cacucucccucaa ggcuuc aa gc      cagc  cgua cau  a
    |||  ||||||||||||| |||||| || ||      ||||  |||| |||   
3'  aac  gugagaggggguu ccggag uu cg      gucg  gcau gug  a
   -   ug             u      -  -  ---gac    --    u   uc
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Poptr2_0; GCA_000002775.2) Overlapping transcripts
CM000350.2: 6873183-6873282 [+]
intergenic
Database links

Mature sequence ptc-miR477e-5p

Accession MIMAT0002062
Previous IDsptc-miR473a
Sequence

8 -  

acucucccucaaggcuucca

 - 27

Get sequence
Evidence experimental; cloned [1], Northern [1], miRNAseq [2]

Mature sequence ptc-miR477e-3p

Accession MIMAT0022914
Sequence

75 -  

ugaggccuuugggggagagugg

 - 96

Get sequence
Evidence experimental; miRNAseq [2]

References

1
PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2
PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).