miRBase entry: ptc-MIR475a

Stem-loop ptc-MIR475a


Accession
MI0002361
Description
Populus trichocarpa ptc-MIR475a precursor miRNA
Gene family
MIPF0000145; MIR475

Literature search
2 open access papers mention ptc-MIR475a
(10 sentences)

Sequence

caucuugaucAAUGGCCAUUGUAAGAGUAGAaggauccaugaagcaauaauucucuuugcuaaaaugugugauaaaacauugacuccugguauuucacucUUACAGUGCCCAUUGAUUAAGaug
(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))..)))))))))))))))).)))))))))))))))

Structure
               C            A    gau   u  -----------------------     uaa 
caucuugaucAAUGG CAUUGUAAGAGU GAag   cca ga                       agcaa   u
||||||||||||||| |||||||||||| ||||   ||| ||                       |||||   u
guaGAAUUAGUUACC GUGACAUUcuca cuuu   ggu cu                       ucguu   c
               C            -    -au   c  caguuacaaaauaguguguaaaa     ucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000353.2: 1876687-1876810 [+]

Database links

Mature ptc-miR475a-3p

Accession MIMAT0002067
Description Populus trichocarpa ptc-miR475a-3p mature miRNA
Sequence 101 - UUACAGUGCCCAUUGAUUAAG - 121
Evidence experimental
cloned [1], Northern [1], miRNAseq [2]

Mature ptc-miR475a-5p

Accession MIMAT0022915
Description Populus trichocarpa ptc-miR475a-5p mature miRNA
Sequence 11 - AAUGGCCAUUGUAAGAGUAGA - 31
Evidence experimental
miRNAseq [2]

References

  1. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203

  2. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034