Stem-loop sequence ptc-MIR475b

Accession

MI0002362 (change log)

Description

Populus trichocarpa miR475b stem-loop

Gene family

MIPF0000145; MIR475

Literature search

2 open access papers mention ptc-MIR475b
(10 sentences)

Stem-loop

   guc                   c            a    g   -------------------   -ga     uaa 
5'    auaacaucuugaucaaugg cauuguaagagu gaag auc                   cau   agcaa   c
      ||||||||||||||||||| |||||||||||| |||| |||                   |||   |||||   u
3'    uauuguagaauuaguuacc gugacauucuua cuuu uag                   gua   ucguu   c
   caa                   c            -    a   uucucagauaaaccagcgu   aag     ucu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000344.2: 14223469-14223604 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000078F27B_3694
• miRBase Tracker:MI0002362

Mature sequence ptc-miR475b-5p

• Accession: MIMAT0022916
• Sequence: 18 - aauggccauuguaagaguaga - 38
• Evidence: experimental; miRNAseq [2]

Mature sequence ptc-miR475b-3p

• Accession: MIMAT0002068
• Previous IDs: ptc-miR475b
• Sequence: 106 - uuacagugcccauugauuaag - 126
• Evidence: experimental; cloned [1], Northern [1], miRNAseq [2]

References

1. PMID:15994906 "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis" Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL Plant Cell. 17:2186-2203(2005).
2. PMID:22442676 "Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets" Puzey JR, Karger A, Axtell M, Kramer EM PLoS One. 7:e33034(2012).