miRBase entry: ssc-mir-106a

Stem-loop ssc-mir-106a


Accession
MI0002412
Description
Sus scrofa ssc-mir-106a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
12 open access papers mention ssc-mir-106a
(32 sentences)

Sequence

20 reads, 20 reads per million, 7 experiments
ccuuggccguguAAAAGUGCUUACAGUGCAGGUAGCuuuuugagaucuacugcaaugcaagcacuucuuacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure
  u   cc      -        A  G     G   C   u 
cc ugg  guguAA AAGUGCUU CA UGCAG UAG uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacauu uucacgaa gu acguc auc aga  
  u   au      c        c  a     -   u   g 


Annotation confidence Not enough data
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Genome context
chrX: 126200183-126200263 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-106a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-106a

Accession MIMAT0002118
Description Sus scrofa ssc-miR-106a mature miRNA
Sequence 13 - AAAAGUGCUUACAGUGCAGGUAGC - 36
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100