miRBase entry: ssc-mir-135-1

Stem-loop ssc-mir-135-1


Accession
MI0002415
Description
Sus scrofa ssc-mir-135-1 precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
3 open access papers mention ssc-mir-135-1
(11 sentences)

Sequence

8 reads, 23 reads per million, 6 experiments
aggccucgcuguucucUAUGGCUUUUUAUUCCUAUGUGAuucuacugcucauucauauagggauuggagccguggcgcacggcggggaca
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))...

Structure
agg         u u          UU            uucua 
   ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
   ||||||||| | ||||||||||  ||||||||||||     u
   ggggcggca g ggugccgagg  uagggauauacu     g
aca         c c          -u            uacuc 


Annotation confidence Not enough data
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Genome context
chr13: 37564051-37564140 [+]

Database links

Mature ssc-miR-135

Accession MIMAT0002121
Description Sus scrofa ssc-miR-135 mature miRNA
Sequence 17 - UAUGGCUUUUUAUUCCUAUGUGA - 39
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328