miRBase entry: ssc-mir-224

Stem-loop ssc-mir-224


Accession
MI0002426
Description
Sus scrofa ssc-mir-224 precursor miRNA
Gene family
MIPF0000088; mir-224

Literature search
7 open access papers mention ssc-mir-224
(13 sentences)

Sequence

gggcuuuCAAGUCACUAGUGGUUCCGUUUAguagaagguuuugcauuguuucaaaauggugcccuagugacuacaaagccc
(((((((..(((((((((.(((.((((((.(((((....))))).........)))))).))))))))))))..)))))))

Structure
       CA         U   U      --------A     a 
gggcuuu  AGUCACUAG GGU CCGUUU         guaga g
|||||||  ||||||||| ||| ||||||         |||||  
cccgaaa  ucagugauc ccg gguaaa         cguuu g
       ca         -   u      acuuuguua     u 


Annotation confidence Not enough data
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Genome context
chrX: 140860060-140860140 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-224
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-224

Accession MIMAT0002132
Description Sus scrofa ssc-miR-224 mature miRNA
Sequence 8 - CAAGUCACUAGUGGUUCCGUUUA - 30
Evidence not_experimental

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70