miRBase entry: ssc-mir-26a

Stem-loop ssc-mir-26a


Accession
MI0002429
Description
Sus scrofa ssc-mir-26a precursor miRNA
Gene family
MIPF0000043; mir-26

Literature search
30 open access papers mention ssc-mir-26a
(163 sentences)

Sequence

4642 reads, 1295 reads per million, 15 experiments
ggcuguggcuggaUUCAAGUAAUCCAGGAUAGGCUguuuccaucugugaggccuauucuugauuacuuguuucuggaggcagcu
((((((..(((((..(((((((((.((((((((((..............)))))))))).)))))))))..)))))..))))))

Structure
      gg     UU         C          guuucc 
ggcugu  cugga  CAAGUAAUC AGGAUAGGCU      a
||||||  |||||  ||||||||| ||||||||||       
ucgacg  ggucu  guucauuag ucuuauccgg      u
      ga     uu         u          aguguc 


Annotation confidence Not enough data
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Genome context
chrUScaf3878: 40640-40723 [+]

Database links

Mature ssc-miR-26a

Accession MIMAT0002135
Description Sus scrofa ssc-miR-26a mature miRNA
Sequence 14 - UUCAAGUAAUCCAGGAUAGGCU - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100