Stem-loop sequence ssc-mir-301

Accession

MI0002432 (change log)

Description

Sus scrofa miR-301 stem-loop

Gene family

MIPF0000034; mir-130

Literature search

3 open access papers mention ssc-mir-301
(5 sentences)

Stem-loop

   --   aa  a     c    ---u      c   ----a       
5'   gcu  ca augcu ugac    uuauug acu     cuguac 
     |||  || ||||| ||||    |||||| |||     ||||| u
3'   cga  gu uacga acug    gauaac uga     gacauu 
   ga   ga  c     a    uuau      c   ccauc       

Deep sequencing

26 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: not enough data

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Database links

• EntrezGene:MIR301
• miRBase Tracker:MI0002432

Mature sequence ssc-miR-301

• Accession: MIMAT0002138
• Sequence: 48 - caguccaauaguauugucaaagc - 70
• Deep sequencing: 12 reads, 7 experiments
• Evidence: by similarity; MI0000745

References

1. PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).