miRBase entry: ssc-mir-301

Stem-loop ssc-mir-301


Accession
MI0002432
Description
Sus scrofa ssc-mir-301 precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
3 open access papers mention ssc-mir-301
(5 sentences)

Sequence

gcuaacaaaugcucugacuuuauugcacuacuguacuuuacagcuacCAGUCCAAUAGUAUUGUCAAAGCaucugagagcag
(((..((.(((((.((((..(((((....((((((((....)).)).))))....)))))..)))).))))).))..)))..

Structure
--   aa  a     c    uu     cacu    -  -  u 
  gcu  ca augcu ugac  uauug    acug ua cu u
  |||  || ||||| ||||  |||||    |||| || ||  
  cga  gu uaCGA ACUG  AUGAU    UGAC au ga a
ga   ga  c     A    UU     AACC    c  c  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssc-miR-301

Accession MIMAT0002138
Description Sus scrofa ssc-miR-301 mature miRNA
Sequence 48 - CAGUCCAAUAGUAUUGUCAAAGC - 70
Evidence not_experimental

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70