miRBase entry: ssc-mir-323

Stem-loop ssc-mir-323


Accession
MI0002433
Description
Sus scrofa ssc-mir-323 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
7 open access papers mention ssc-mir-323
(11 sentences)

Sequence

1 reads, 2 reads per million, 1 experiments
uugguacuuggagagaggugguccguggcgcguucgcuuuauuuauggcGCACAUUACACGGUCGACCUCUuugcgguaucuaauc
..((((((.(.((((((((.(.(((((..(.((.((((........)))).)).)..))))).).)))))))).))))))).....

Structure
---uu      u g        g u     gc c  u    uua 
     gguacu g agagaggu g ccgug  g gu cgcu   u
     |||||| | |||||||| | |||||  | || ||||    
     cuaugg c uuUCUCCA C GGCAC  U CA Gcgg   u
cuaau      - g        G U     AU A  C    uau 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssc-miR-323

Accession MIMAT0002139
Description Sus scrofa ssc-miR-323 mature miRNA
Sequence 50 - GCACAUUACACGGUCGACCUCU - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100