miRBase entry: ssc-mir-95

Stem-loop ssc-mir-95


Accession
MI0002436
Description
Sus scrofa ssc-mir-95 precursor miRNA
Gene family
MIPF0000098; mir-95

Literature search
2 open access papers mention ssc-mir-95
(75 sentences)

Sequence

33 reads, 56 reads per million, 7 experiments
aacacagugggcgcucaauaaauguuuguugaauugagaugcguuaaaUUCAACGGGUAUUUAUUGAGCAcccacucugug
.(((.((((((.(((((((((((((((((((((((...........))))))))))))))))))))))).)))))).))).

Structure
a   c      c                       gaga 
 aca aguggg gcucaauaaauguuuguugaauu    u
 ||| |||||| |||||||||||||||||||||||    g
 ugu ucaccc CGAGUUAUUUAUGGGCAACUUaa    c
g   c      A                       auug 


Annotation confidence Not enough data
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Genome context
chr8: 4277238-4277318 [+]

Database links

Mature ssc-miR-95

Accession MIMAT0002142
Description Sus scrofa ssc-miR-95 mature miRNA
Sequence 49 - UUCAACGGGUAUUUAUUGAGCA - 70
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328