Stem-loop sequence ssc-mir-95

AccessionMI0002436 (change log)
DescriptionSus scrofa miR-95 stem-loop
Gene family MIPF0000098; mir-95
Literature search

2 open access papers mention ssc-mir-95
(75 sentences)

Stem-loop 
   a   c      c            uu         gaga 
5'  aca aguggg gcucaauaaaug  uguugaauu    u
    ||| |||||| ||||||||||||  |||||||||    g
3'  ugu ucaccc cgaguuauuuau  gcaacuuaa    c
   g   c      a            gg         auug
Get sequence
Deep sequencing
4556 reads, 1.11e+03 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr8: 4277238-4277318 [+]
sense
ENSSSCT00000009541 ; ABLIM2-201; intron 17
Database links

Mature sequence ssc-miR-95

Accession MIMAT0002142
Sequence

49 -  

uucaacggguauuuauugagca

 - 70

Get sequence
Deep sequencing4549 reads, 15 experiments
Evidence experimental; Illumina [2-3]

References

1
PMID:15885146 "Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing" Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L BMC Genomics. 6:70(2005).
2
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).