miRBase entry: ssc-mir-183

Stem-loop ssc-mir-183


Accession
MI0002439
Description
Sus scrofa ssc-mir-183 precursor miRNA
Gene family
MIPF0000066; mir-183

Literature search
9 open access papers mention ssc-mir-183
(26 sentences)

Sequence

717 reads, 509 reads per million, 11 experiments
cugugUAUGGCACUGGUAGAAUUCACUGugaacagucucggucagugaauuaccgaagggccauaaacag
((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))

Structure
    g      A  --    GA        --   ac 
cugu UAUGGC CU  GGUA  AUUCACUG  uga  a
|||| |||||| ||  ||||  ||||||||  |||   
gaca auaccg ga  ccau  uaagugac  gcu  g
    a      g  ag    --        ug   cu 


Annotation confidence Not enough data
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Genome context
chr18: 20030651-20030720 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-183

Accession MIMAT0002145
Description Sus scrofa ssc-miR-183 mature miRNA
Sequence 6 - UAUGGCACUGGUAGAAUUCACUG - 28
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100