miRBase entry: ssc-mir-205

Stem-loop ssc-mir-205


Accession
MI0002440
Description
Sus scrofa ssc-mir-205 precursor miRNA
Gene family
MIPF0000058; mir-205

Literature search
7 open access papers mention ssc-mir-205
(14 sentences)

Sequence

2 reads, 12 reads per million, 2 experiments
cucuugUCCUUCAUUCCACCGGAGUCUGucucauacccaaccagauuucaguggagugaagcucaggag
((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))

Structure
      UC           C        ucuca 
cucuug  CUUCAUUCCAC GGAGUCUG     u
||||||  ||||||||||| ||||||||     a
gaggac  gaagugaggug cuuuagac     c
      uc           a        caacc 


Annotation confidence Not enough data
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Genome context
chr9: 146808292-146808360 [-]

Database links

Mature ssc-miR-205

Accession MIMAT0002146
Description Sus scrofa ssc-miR-205 mature miRNA
Sequence 7 - UCCUUCAUUCCACCGGAGUCUG - 28
Evidence experimental
454 [2], Illumina [3-4]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100