Stem-loop ssc-mir-214

Accession

MI0002441

Description

Sus scrofa ssc-mir-214 precursor miRNA

Gene family

MIPF0000062; mir-214

Literature search

25 open access papers mention ssc-mir-214
(65 sentences)

Sequence

235 reads, 135 reads per million, 13 experiments

ggccuggcuggacggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure

ggccu      acgga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 

Annotation confidence High

Genome context

chr9: 126099461-126099570 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-214

Mature ssc-miR-214-3p

• Accession: MIMAT0002147
• Description: Sus scrofa ssc-miR-214-3p mature miRNA
• Sequence: 71 - ACAGCAGGCACAGACAGGCAG - 91
• Evidence: experimental ; Illumina [2]

Mature ssc-miR-214-5p

• Accession: MIMAT0037318
• Description: Sus scrofa ssc-miR-214-5p mature miRNA
• Sequence: 30 - UGCCUGUCUACACUUGCUGUGC - 51
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252