miRBase entry: ssc-mir-32

Stem-loop ssc-mir-32


Accession
MI0002443
Description
Sus scrofa ssc-mir-32 precursor miRNA
Gene family
MIPF0000069; mir-32

Literature search
2 open access papers mention ssc-mir-32
(2 sentences)

Sequence

129 reads, 87 reads per million, 8 experiments
ggagaUAUUGCACAUUACUAAGUUGCauguugucacggccucagugcaauuuagugugugugauauuuuc
(((((((((((((((.((((((((((((((((...))))....)))))))))))))))))))))))))))

Structure
               U            ----    u 
ggagaUAUUGCACAU ACUAAGUUGCau    guug  
||||||||||||||| ||||||||||||    |||| c
cuuuuauagugugug ugauuuaacgug    cggc  
               -            acuc    a 


Annotation confidence Not enough data
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Genome context
chr1: 280645137-280645206 [-]

Database links

Mature ssc-miR-32

Accession MIMAT0002149
Description Sus scrofa ssc-miR-32 mature miRNA
Sequence 6 - UAUUGCACAUUACUAAGUUGC - 26
Evidence not_experimental

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70