miRBase entry: ssc-mir-124a-2

Stem-loop ssc-mir-124a-2


Accession
MI0002450
Description
Sus scrofa ssc-mir-124a-2 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
15 open access papers mention ssc-mir-124a-2
(81 sentences)

Sequence

aggccucucucuccguguucacagcggaccuugauuuaaauguccauacaauUAAGGCACGCGGUGAAUGCCAagaauggggcug
.((((((..(((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))..)))))).

Structure
a      uc   cc        a   ga        uaaau 
 ggccuc  ucu  guguucac gcg  ccuugauu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUuaa     c
g      ua   AC        G   AC        cauac 


Annotation confidence Not enough data
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Genome context
chr14: 14443005-14443089 [-]

Database links

Mature ssc-miR-124a

Accession MIMAT0002156
Description Sus scrofa ssc-miR-124a mature miRNA
Sequence 53 - UAAGGCACGCGGUGAAUGCCA - 73
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100