miRBase entry: ssc-mir-18a

Stem-loop ssc-mir-18a


Accession
MI0002455
Description
Sus scrofa ssc-mir-18a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
18 open access papers mention ssc-mir-18a
(50 sentences)

Sequence

25 reads, 46 reads per million, 10 experiments
gugcuuuuuguucUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuacugcccuaagugcuccuucuggcauaagaaguuaugu
..(((((((((.((((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).)))..))).))))))))).....

Structure
---gu         u   --   U    C   U    A   -  aa u 
     gcuuuuugu cUA  AGG GCAU UAG GCAG UAg ug  g a
     ||||||||| |||  ||| |||| ||| |||| ||| ||  | g
     ugaagaaua ggu  ucc cgug auc cguc auc ac  u a
uguau         c   cu   u    a   c    -   u  ga u 


Annotation confidence Not enough data
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Genome context
chr11: 66610195-66610286 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-18a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-18a

Accession MIMAT0002161
Description Sus scrofa ssc-miR-18a mature miRNA
Sequence 14 - UAAGGUGCAUCUAGUGCAGAUA - 35
Evidence experimental
cloned [2], Illumina [3-4]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100