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miRBase |
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Stem-loop sequence ssc-mir-18a |
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Accession | MI0002455 (change log) | |||||||||||||
Previous IDs | ssc-mir-18 | |||||||||||||
Description | Sus scrofa miR-18a stem-loop | |||||||||||||
Gene family | MIPF0000001; mir-17 | |||||||||||||
Literature search |
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18 open access papers mention ssc-mir-18a | |||||||||||||
Stem-loop |
---gu u -- u uc u a - aa u 5' gcuuuuugu cua agg gca uag gcag uag ug g a ||||||||| ||| ||| ||| ||| |||| ||| || | g 3' ugaagaaua ggu ucc cgu auc cguc auc ac u a uguau c cu u ga c - u ga u |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence ssc-miR-18a |
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Accession | MIMAT0002161 |
Previous IDs | ssc-miR-18 |
Sequence |
14 - uaaggugcaucuagugcagaua - 35 |
Deep sequencing | 596 reads, 15 experiments |
Evidence | experimental; cloned [2], Illumina [3-4] |
References |
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1 |
PMID:15885146
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
BMC Genomics. 6:70(2005).
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2 |
PMID:20180025
"Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
Mol Biol Rep. 37:3567-3574(2010).
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3 |
PMID:21312241
"MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing"
J Cell Biochem. 112:1318-1328(2011).
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4 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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