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miRBase |
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Stem-loop sequence kshv-mir-K12-5 |
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Accession | MI0002481 (change log) | |||||||||||||||||||||||||
Description | Kaposi sarcoma-associated herpesvirus miR-K12-5 stem-loop | |||||||||||||||||||||||||
Stem-loop |
u ua - c u gc g u ac 5' gacc ggua gu cc ggu ccuaag g cu a |||| |||| || || ||| |||||| | || 3' cugg ccgu ca gg ccg ggauuc c ga u a -- u a u ua a - ac |
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Confidence |
Annotation confidence: not enough data
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Comments |
Samols et al. incorrectly named this sequence miR-4 [3]. Cai et al. define the likely miRNA primary transcripts in [4]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence kshv-miR-K12-5-5p |
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Accession | MIMAT0015218 |
Previous IDs | kshv-miR-K12-5* |
Sequence |
7 - agguagucccuggugcccuaagg - 29 |
Evidence | experimental; Illumina [6], SOLiD [7] |
Mature sequence kshv-miR-K12-5-3p |
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Accession | MIMAT0002190 |
Previous IDs | kshv-miR-K12-5 |
Sequence |
46 - uaggaugccuggaacuugccggu - 68 |
Evidence | experimental; cloned [1-3,5], Illumina [6], SOLiD [7] |
References |
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1 |
PMID:15800047
"Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells"
Proc Natl Acad Sci U S A. 102:5570-5575(2005).
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2 |
PMID:15782219
"Identification of microRNAs of the herpesvirus family"
Nat Methods. 2:269-276(2005).
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3 |
PMID:15994824
"Cloning and identification of a microRNA cluster within the latency-associated region of Kaposi's sarcoma-associated herpesvirus"
J Virol. 79:9301-9305(2005).
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4 |
PMID:16474131
"Transcriptional origin of Kaposi's sarcoma-associated herpesvirus microRNAs"
J Virol. 80:2234-2242(2006).
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5 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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6 | |
7 |
PMID:20566670
"Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs"
RNA. 16:1540-1558(2010).
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