Stem-loop ppa-mir-135-1

Accession

MI0002539

Description

Pan paniscus ppa-mir-135-1 precursor miRNA

Gene family

MIPF0000028; mir-135

Sequence

aggccucgcuguucucUAUGGCUUUUUAUUCCUAUGUGAuucuacugcucacucauauagggauuggagccguggcgcacggcggggacg
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))...

Structure

agg         u u          UU            uucua 
   ccucgcugu c cUAUGGCUUU  AUUCCUAUGUGA     c
   ||||||||| | ||||||||||  ||||||||||||     u
   ggggcggca g ggugccgagg  uagggauauacu     g
gca         c c          -u            cacuc 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr3: 53465664-53465753 [-]

Mature ppa-miR-135

• Accession: MIMAT0002250
• Description: Pan paniscus ppa-miR-135 mature miRNA
• Sequence: 17 - UAUGGCUUUUUAUUCCUAUGUGA - 39
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24