Stem-loop sequence ptr-mir-145

AccessionMI0002559 (change log)
DescriptionPan troglodytes miR-145 stem-loop
Gene family MIPF0000079; mir-145
   c   u  u     c  uc    u  c            uagau 
5'  acc ug ccuca gg  cagu uu ccaggaaucccu     g
    ||| || ||||| ||  |||| || ||||||||||||     c
3'  ugg ac ggagu uc  guca aa gguccuuagggg     u
   u   u  u     -  uu    u  a            uagaa 
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Confidence Annotation confidence: not enough data
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Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr5: 149630713-149630800 [+]
Clustered miRNAs
< 10kb from ptr-mir-145
ptr-mir-143chr5: 149628986-149629091 [+]
ptr-mir-145chr5: 149630713-149630800 [+]
Database links

Mature sequence ptr-miR-145

Accession MIMAT0002267

16 - 


 - 39

Get sequence
Evidence by similarity; MI0000461
Predicted targets


PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).