miRBase entry: ppy-mir-125b-2

Stem-loop ppy-mir-125b-2


Accession
MI0002577
Description
Pongo pygmaeus ppy-mir-125b-2 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

accagacuuuuccuagUCCCUGAGACCCUAACUUGUGAgguauuuuaguaacaucacaagucaggcucuugggaccuaggcggagggga
.((...((((.(((((((((.((((.(((.((((((((.((.........)).)))))))).))).)))))))).))))).)))).)).

Structure
a  aga    u     -    U    C   A        g  auu 
 cc   cuuu ccuag UCCC GAGA CCU ACUUGUGA gu   u
 ||   |||| ||||| |||| |||| ||| |||||||| ||   u
 gg   gagg ggauc aggg uucu gga ugaacacu ca   a
a  --g    c     c    -    c   c        a  aug 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr21: 16302280-16302368 [+]

Database links

Mature ppy-miR-125b

Accession MIMAT0002223
Description Pongo pygmaeus ppy-miR-125b mature miRNA
Sequence 17 - UCCCUGAGACCCUAACUUGUGA - 38
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24