miRBase entry: ptr-mir-127

Stem-loop ptr-mir-127


Accession
MI0002583
Description
Pan troglodytes ptr-mir-127 precursor miRNA
Gene family
MIPF0000080; mir-127

Literature search
1 open access papers mention ptr-mir-127
(92 sentences)

Sequence

ugugaucacugucuccagccugcugaagcucagagggcucugauucagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucggaagucucaucauc
.(((((.(((...(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).))))))...))))).

Structure
u     --c   guc   a   u   g         g  c      --  a 
 gugau   acu   ucc gcc gcu aagcucaga gg ucugau  uc g
 |||||   |||   ||| ||| ||| ||||||||| || ||||||  || a
 uacua   uga   agg ugg CGG UUCGAGUCU CC AGGCUa  ag a
c     cuc   ---   c   U   -         G  U      cu  a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr14: 86127939-86128035 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ptr-mir-127
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-127

Accession MIMAT0002282
Description Pan troglodytes ptr-miR-127 mature miRNA
Sequence 57 - UCGGAUCCGUCUGAGCUUGGCU - 78
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24