Stem-loop ppy-mir-134

Accession

MI0002590

Description

Pongo pygmaeus ppy-mir-134 precursor miRNA

Gene family

MIPF0000112; mir-134

Sequence

cagggugUGUGACUGGUUGACCAGAGGGgcaugcacuguguucacccugugggccaccuagucaccaacccuc
.(((((..((((((((.((.(((.((((((((.....))))...)))).)))..)).))))))))..))))).

Structure

c     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr14: 102616871-102616943 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from ppy-mir-134

Mature ppy-miR-134

• Accession: MIMAT0002289
• Description: Pongo pygmaeus ppy-miR-134 mature miRNA
• Sequence: 8 - UGUGACUGGUUGACCAGAGGG - 28
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24