miRBase entry: ptr-mir-136

Stem-loop ptr-mir-136


Accession
MI0002593
Description
Pan troglodytes ptr-mir-136 precursor miRNA
Gene family
MIPF0000099; mir-136


Sequence

ugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuaugcuccaucaucgucucaaaugagucuucagaggguucu
.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).

Structure
u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuucugag uaaac   gcuacuaccu   a
u        a        -     ucu          cgu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr14: 86129665-86129746 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ptr-mir-136
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-136

Accession MIMAT0002292
Description Pan troglodytes ptr-miR-136 mature miRNA
Sequence 15 - ACUCCAUUUGUUUUGAUGAUGGA - 37
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24