Stem-loop ppy-mir-206

Accession

MI0002619

Description

Pongo pygmaeus ppy-mir-206 precursor miRNA

Gene family

MIPF0000038; mir-1

Sequence

ugcuucccgaggccacaugcuucuuuauauccccauauggauuacuuugcuaUGGAAUGUAAGGAAGUGUGUGGuuucggcaagug
.((((.((((((((((((((((((((((((..(((((.(.(......).)))))).)))))))))))))))))))))))).)))).

Structure

u    c                        cc     u g uu 
 gcuu ccgaggccacaugcuucuuuauau  ccaua g a  a
 |||| ||||||||||||||||||||||||  ||||| | |   
 ugaa ggcuuuGGUGUGUGAAGGAAUGUA  GGUau c u  c
g    c                        -A     - g uu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr6: 52482243-52482328 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-206

Mature ppy-miR-206

• Accession: MIMAT0002318
• Description: Pongo pygmaeus ppy-miR-206 mature miRNA
• Sequence: 53 - UGGAAUGUAAGGAAGUGUGUGG - 74
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24