miRBase entry: ppy-mir-22

Stem-loop ppy-mir-22


Accession
MI0002632
Description
Pongo pygmaeus ppy-mir-22 precursor miRNA
Gene family
MIPF0000053; mir-22


Sequence

ggcugagccgcaguaguucuucaguggcaagcuuuauguccugacccagcuaAAGCUGCCAGUUGAAGAACUGUugcccucugcc
(((.(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).))).)))

Structure
   u   cc               -     a      u  ccu 
ggc gag  gcaguaguucuucag uggca gcuuua gu   g
||| |||  ||||||||||||||| ||||| |||||| ||   a
ccg cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
   u   -c               G     -      -  acc 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr17: 1575636-1575720 [-]

Database links

Mature ppy-miR-22

Accession MIMAT0002331
Description Pongo pygmaeus ppy-miR-22 mature miRNA
Sequence 53 - AAGCUGCCAGUUGAAGAACUGU - 74
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24