miRBase entry: ppy-mir-24-1

Stem-loop ppy-mir-24-1

Accession

MI0002638

Description

Pongo pygmaeus ppy-mir-24-1 precursor miRNA

Gene family

MIPF0000041; mir-24

Sequence

cuccgGUGCCUACUGAGCUGAUAUCAGUucucauuuuacacacUGGCUCAGUUCAGCAGGAACAGgag
((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).))))

Structure

    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 91049387-91049454 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-24-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-24-5p

Accession	MIMAT0002338
Description	Pongo pygmaeus ppy-miR-24-5p mature miRNA
Sequence	6 - GUGCCUACUGAGCUGAUAUCAGU - 28
Evidence	not_experimental

Mature ppy-miR-24-3p

Accession	MIMAT0002339
Description	Pongo pygmaeus ppy-miR-24-3p mature miRNA
Sequence	44 - UGGCUCAGUUCAGCAGGAACAG - 65
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24