miRBase entry: ppy-mir-31

Stem-loop ppy-mir-31


Accession
MI0002674
Description
Pongo pygmaeus ppy-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31


Sequence

ggagaggaGGCAAGAUGCUGGCAUAGCUGuugaacugggaaccugcuaugccaacauauugccaucuuucc
(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).)))))))

Structure
       a     G   C         -U   gaa 
ggagagg GGCAA AUG UGGCAUAGC  Guu   c
||||||| ||||| ||| |||||||||  |||    
ccuuucu ccguu uac accguaucg  caa   u
       a     a   a         uc   ggg 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr9: 40533709-40533779 [+]

Database links

Mature ppy-miR-31

Accession MIMAT0002382
Description Pongo pygmaeus ppy-miR-31 mature miRNA
Sequence 9 - GGCAAGAUGCUGGCAUAGCUG - 29
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24