miRBase entry: ppa-mir-33

Stem-loop ppa-mir-33


Accession
MI0002689
Description
Pan paniscus ppa-mir-33 precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

cugugGUGCAUUGUAGUUGCAUUGcauguucuggugguacccaugcaauguuuccacagugcaucacag
((((((((((((((.(..((((((((((....(((...)))))))))))))..).))))))))))))))

Structure
              A UU          uucu   g 
cugugGUGCAUUGU G  GCAUUGcaug    ggu  
|||||||||||||| |  ||||||||||    ||| g
gacacuacgugaca c  uguaacguac    cca  
              c uu          ----   u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr22: 40878595-40878663 [+]

Database links

Mature ppa-miR-33

Accession MIMAT0002397
Description Pan paniscus ppa-miR-33 mature miRNA
Sequence 6 - GUGCAUUGUAGUUGCAUUG - 24
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24