miRBase entry: ptr-mir-124a

Stem-loop ptr-mir-124a


Accession
MI0002765
Description
Pan troglodytes ptr-mir-124a precursor miRNA
Gene family
MIPF0000021; mir-124


Sequence

aucaagauuagaggcucugcucuccguguucacagcggaccuugauuuaaugucauacaaUUAAGGCACGCGGUGAAUGCCAagagcggagccuacggcugcacuugaa
.(((((..(((((((((((((((..((((((((.(((..((((((((...........))))))))..))).))))))))..))))))))))))....)))..))))).

Structure
a     au   ----            cc        a   ga        uaau 
 ucaag  uag    aggcucugcucu  guguucac gcg  ccuugauu    g
 |||||  |||    ||||||||||||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcgaga  CGUAAGUG CGC  GGAAUUaa    c
a     ac   ggca            AC        G   AC        caua 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr8: 65469871-65469979 [+]

Database links

Mature ptr-miR-124a

Accession MIMAT0002469
Description Pan troglodytes ptr-miR-124a mature miRNA
Sequence 61 - UUAAGGCACGCGGUGAAUGCCA - 82
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24