miRBase entry: ppy-mir-7-1

Stem-loop ppy-mir-7-1


Accession
MI0002776
Description
Pongo pygmaeus ppy-mir-7-1 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

uuggauguuggccuaguucugugUGGAAGACUAGUGAUUUUGUUguuuuuagauaacuaaaucgacaacaaaucacagucugccauauggcacaggccaugccucuacag
.((((.((((((((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))))))).)).))))...

Structure
--u    u  -      a  u        A     A       U      --     a 
   ugga gu uggccu gu cugugUGG AGACU GUGAUUU GUUguu  uuuag u
   |||| || |||||| || |||||||| ||||| ||||||| ||||||  |||||  
   aucu cg accgga ca gguauacc ucuga cacuaaa caacag  aaauc a
gac    c  u      -  c        g     -       -      cu     a 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr9: 79135649-79135758 [-]

Database links

Mature ppy-miR-7

Accession MIMAT0002480
Description Pongo pygmaeus ppy-miR-7 mature miRNA
Sequence 24 - UGGAAGACUAGUGAUUUUGUU - 44
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24