Stem-loop ppy-mir-187

Accession

MI0002818

Description

Pongo pygmaeus ppy-mir-187 precursor miRNA

Gene family

MIPF0000078; mir-187

Sequence

gguugggcucaccaugacacagugugagaccucgggcuacaacauaggacccgggcgcugcucugaccccUCGUGUCUUGUGUUGCAGCCGgagggacgcagguccgca
.......((((((........).)))))..(((.((((.(((((((((((.((((.((......).).)).)).))))))))))).)))).)))((((....))))...

Structure

gguugggcucaccaugacacagugugagac   g    a           c  -  c - ug 
                              cuc ggcu caacauaggac cg gg g c  c
                              ||| |||| ||||||||||| || || | |   
                              gag CCGA GUUGUGUUCUG GC cc c g  u
---------------acgccuggacgcagg   G    C           U  U  c a uc 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr18: 48015845-48015953 [-]

Mature ppy-miR-187

• Accession: MIMAT0002516
• Description: Pongo pygmaeus ppy-miR-187 mature miRNA
• Sequence: 71 - UCGUGUCUUGUGUUGCAGCCG - 91
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24