Stem-loop mml-mir-199a-1

Accession

MI0002834

Description

Macaca mulatta mml-mir-199a-1 precursor miRNA

Gene family

MIPF0000040; mir-199

Literature search

2 open access papers mention mml-mir-199a-1
(2 sentences)

Sequence

162740 reads, 1536 reads per million, 9 experiments

aggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguacaguagucugcacauugguuagacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).

Structure

aggaa   u  ggaga    -    c   gcC       U        C   U  --  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| ||| ||  ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca gu  cc  a
----a   -  -----    a    u   auu       c        -   u  ug  gu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 195411983-195412092 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-199a-1

Mature mml-miR-199a

• Accession: MIMAT0002531
• Description: Macaca mulatta mml-miR-199a mature miRNA
• Sequence: 31 - CCCAGUGUUCAGACUACCUGUUC - 53
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24