miRBase entry: ppy-mir-204

Stem-loop ppy-mir-204


Accession
MI0002840
Description
Pongo pygmaeus ppy-mir-204 precursor miRNA
Gene family
MIPF0000042; mir-204


Sequence

ggcuacagucuuucuucaugugacucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggaggcugggaaggcaaagggacguucaauugucaucacuggc
.....((((..........(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).))))..

Structure
ggcua    cuuucuucau     ucg     U          A     U    gagaau 
     cagu          gugac   uggac UCCCUUUGUC UCCUA GCCU      a
     ||||          |||||   ||||| |||||||||| ||||| ||||      u
     guca          uacug   acuug agggaaacgg agggu cgga      a
---cg    ---------c     uua     c          a     -    ggaagu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr9: 65499879-65499988 [-]

Database links

Mature ppy-miR-204

Accession MIMAT0002537
Description Pongo pygmaeus ppy-miR-204 mature miRNA
Sequence 33 - UUCCCUUUGUCAUCCUAUGCCU - 54
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24