Stem-loop ppy-mir-211

Accession

MI0002851

Description

Pongo pygmaeus ppy-mir-211 precursor miRNA

Gene family

MIPF0000042; mir-204

Sequence

ucacccagccaugugacuuguggacUUCCCUUUGUCAUCCUUCGCCUagggcucugagcagggcagggacagcaaaggggugcucaguugucacuucccacagcacggag
............(((((...(((.(.(((((((((..(((((.((((...(((...))).)))))))))..))))))))).).)))...))))).(((........))).

Structure

----ucacccagccau     uug   a U         CA     C    agg   c 
                gugac   ugg c UCCCUUUGU  UCCUU GCCU   gcu  
                |||||   ||| | |||||||||  ||||| ||||   ||| u
                cacug   acu g ggggaaacg  aggga cggg   cga  
gaggcacgacacccuu     uug   c u         ac     -    --a   g 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr15: 26918064-26918173 [-]

Mature ppy-miR-211

• Accession: MIMAT0002548
• Description: Pongo pygmaeus ppy-miR-211 mature miRNA
• Sequence: 26 - UUCCCUUUGUCAUCCUUCGCCU - 47
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24