miRBase entry: ppa-mir-216

Stem-loop ppa-mir-216


Accession
MI0002865
Description
Pan paniscus ppa-mir-216 precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

gauggcugugaguuggcuUAAUCUCAGCUGGCAACUGUGagauguucauacaaucccucacaguggucucugggauuaugcuaaacagagcaauuuccuagcccucacga
((.(((((.((((((((.(((((((((..(((.((((((((.(((....)))....)))))))).))).))))))))).)))))..........))).))))).))....

Structure
----  u     u   ----------     u         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUGag    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg auuaggguc  cug ugacacuc    aca a
agca  c     c   uaacgagaca     u         -u   g        ccua   u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr2A: 57281586-57281695 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppa-mir-216
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-216

Accession MIMAT0002562
Description Pan paniscus ppa-miR-216 mature miRNA
Sequence 19 - UAAUCUCAGCUGGCAACUGUG - 39
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24