miRBase entry: ggo-mir-217

Stem-loop ggo-mir-217


Accession
MI0002866
Description
Gorilla gorilla ggo-mir-217 precursor miRNA
Gene family
MIPF0000077; mir-217


Sequence

aguauaauuauuacauaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAUaagaaucagucaccaucaguuccuaaugcauugccuucagcaucuaaacaag
.(((.......)))...((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))...

Structure
aguauaauuauuacaua    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
--------------gaa    -u     a u  c  u     a          c a   acu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr2A: 51003282-51003391 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ggo-mir-217
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-217

Accession MIMAT0002563
Description Gorilla gorilla ggo-miR-217 mature miRNA
Sequence 35 - UACUGCAUCAGGAACUGAUUGGAU - 58
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24