miRBase entry: ppa-mir-217

Stem-loop ppa-mir-217

Accession

MI0002867

Description

Pan paniscus ppa-mir-217 precursor miRNA

Gene family

MIPF0000077; mir-217

Sequence

aguauaauuauuacauaguuuuugaugucgcagaUACUGCAUCAGGAACUGAUUGGAUaagaaucagucaccaucaguuccuaaugcauugccuucagcaucuaaacaag
.(((.......)))...((((..(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).))))).))))...

Structure

aguauaauuauuacaua    uu     c c  a  C     C          U -   aag 
                 guuu  gaugu g ag UA UGCAU AGGAACUGAU G GAU   a
                 ||||  ||||| | || || ||||| |||||||||| | |||    
                 caaa  cuacg c uc gu acgua uccuugacua c cug   a
--------------gaa    -u     a u  c  u     a          c a   acu

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr2A: 57275614-57275723 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-217

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-217

Accession	MIMAT0002564
Description	Pan paniscus ppa-miR-217 mature miRNA
Sequence	35 - UACUGCAUCAGGAACUGAUUGGAU - 58
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24