miRBase entry: ppy-mir-218-2

Stem-loop ppy-mir-218-2


Accession
MI0002878
Description
Pongo pygmaeus ppy-mir-218-2 precursor miRNA
Gene family
MIPF0000026; mir-218


Sequence

gaccagucgcuuaugcggggcuuuccuUUGUGCUUGAUCUAACCAUGUgguggaacgauggaaacggaacaugguucugucaagcaccgcggaaagcaccgugcucuccugca
.......(((....)))(((((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).)).(((......)))

Structure
gaccagucgcuuaugcg  -       uUU         CU        gg  gaacg 
                 gg gcuuucc   GUGCUUGAU  AACCAUGU  ug     a
                 || |||||||   |||||||||  ||||||||  ||      
                 cc cgaaagg   cacgaacug  uugguaca  gc     u
----acguccucucgug  a       cgc         uc        ag  aaagg 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr5: 171408121-171408233 [-]

Database links

Mature ppy-miR-218

Accession MIMAT0002569
Description Pongo pygmaeus ppy-miR-218 mature miRNA
Sequence 28 - UUGUGCUUGAUCUAACCAUGU - 48
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24