miRBase entry: mml-mir-219-1

Stem-loop mml-mir-219-1


Accession
MI0002884
Description
Macaca mulatta mml-mir-219-1 precursor miRNA
Gene family
MIPF0000044; mir-219


Sequence

774 reads, 10 reads per million, 9 experiments
ccgccccgggccgcggcuccUGAUUGUCCAAACGCAAUUCUcgagucuauggcucuggccgagaguugagucuggacgucccgagccgccgcccccaaaccucgaggggg
...((((((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))...........)))).

Structure
ccg    -----------    c       cU   U     A  G         a   uau 
   cccc           gggc gcggcuc  GAU GUCCA AC CAAUUCUcg guc   g
   ||||           |||| |||||||  ||| ||||| || ||||||||| |||   g
   gggg           cccg cgccgag  cug caggu ug guugagagc cgg   c
--g    agcuccaaacc    c       cc   -     c  a         -   ucu 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr4: 34051822-34051931 [+]

Database links

Mature mml-miR-219

Accession MIMAT0002575
Description Macaca mulatta mml-miR-219 mature miRNA
Sequence 21 - UGAUUGUCCAAACGCAAUUCU - 41
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24