miRBase entry: ppy-mir-223

Stem-loop ppy-mir-223


Accession
MI0002900
Description
Pongo pygmaeus ppy-mir-223 precursor miRNA
Gene family
MIPF0000067; mir-223


Sequence

ccuggccuccugcagugccacgcuccguguauuugacaagcugaguuagacacuccgugugguagagUGUCAGUUUGUCAAAUACCCCaagugcggcacaugcuuaccag
.((((......((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))...))))

Structure
c    ccuccu   -     a    cc u              gaguua       cgu 
 cugg      gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    aC C              ------       aug 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 63380851-63380960 [+]

Database links

Mature ppy-miR-223

Accession MIMAT0002591
Description Pongo pygmaeus ppy-miR-223 mature miRNA
Sequence 68 - UGUCAGUUUGUCAAAUACCCC - 88
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24