miRBase entry: ppy-mir-224

Stem-loop ppy-mir-224


Accession
MI0002906
Description
Pongo pygmaeus ppy-mir-224 precursor miRNA
Gene family
MIPF0000088; mir-224


Sequence

gggcuuuCAAGUCACUAGUGGUUCCGUUUAguagaugauugugcauuguuucaaaauggugcccuagugacuacaaagccc
(((((((..(((((((((.(((.((((((.(.(((((((.....)))))))).)))))).))))))))))))..)))))))

Structure
       CA         U   U      A u       u 
gggcuuu  AGUCACUAG GGU CCGUUU g agaugau g
|||||||  ||||||||| ||| |||||| | ||||||| u
cccgaaa  ucagugauc ccg gguaaa c uuuguua g
       ca         -   u      a -       c 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 152092436-152092516 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-224
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-224

Accession MIMAT0002597
Description Pongo pygmaeus ppy-miR-224 mature miRNA
Sequence 8 - CAAGUCACUAGUGGUUCCGUUUA - 30
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24