Stem-loop ggo-mir-181a-1

Accession

MI0002937

Description

Gorilla gorilla ggo-mir-181a-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

1 open access papers mention ggo-mir-181a-1
(9 sentences)

Sequence

ugaguuuugagguugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauuaaaaucaaaACCAUCGACCGUUGAUUGUACCcuauggcuaaccaucaucuucucca
.(((...((((((((((..((.(.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).))).).))..))).)))).)))....)))..

Structure

-u   -uuu   -    -   uc  u A   U      CU       A    g  au 
  gag    uga gguu gcu  ag g ACA UCAACG  GUCGGUG GUuu ga  u
  |||    ||| |||| |||  || | ||| ||||||  ||||||| |||| ||  a
  cuc    acu ccaa cgg  uc C UGU AGUUGC  CAGCUAC CAaa cu  a
ac   uucu   a    u   ua  C A   U      --       -    a  aa 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 178419833-178419942 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-181a-1

Mature ggo-miR-181a-5p

• Accession: MIMAT0002503
• Description: Gorilla gorilla ggo-miR-181a-5p mature miRNA
• Sequence: 24 - AACAUUCAACGCUGUCGGUGAGU - 46
• Evidence: not_experimental

Mature ggo-miR-181a-3p

• Accession: MIMAT0002629
• Description: Gorilla gorilla ggo-miR-181a-3p mature miRNA
• Sequence: 64 - ACCAUCGACCGUUGAUUGUACC - 85
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24