miRBase entry: ggo-mir-16

Stem-loop ggo-mir-16

Accession

MI0002948

Description

Gorilla gorilla ggo-mir-16 precursor miRNA

Gene family

MIPF0000006; mir-15

Literature search

1 open access papers mention ggo-mir-16
(2 sentences)

Sequence

gucagcagugccuUAGCAGCACGUAAAUAUUGGCGuuaagauucuaaaauuaucuccaguauuaacugugcugcugaaguaagguugac
((((((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))))))

Structure

      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 31956521-31956609 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-16

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-16

Accession	MIMAT0002641
Description	Gorilla gorilla ggo-miR-16 mature miRNA
Sequence	14 - UAGCAGCACGUAAAUAUUGGCG - 35
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24