miRBase entry: ppa-mir-20

Stem-loop ppa-mir-20


Accession
MI0002986
Description
Pan paniscus ppa-mir-20 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

guagcacUAAAGUGCUUAUAGUGCAGGUAguguuuaguuaucuacugcauuaugagcacuuaaaguacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure
    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAg    u
|||| |||  ||||||||||||||||| |||    a
cguc uga  uucacgaguauuacguc auc    g
    a   aa                 -   uauu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr13: 91707788-91707858 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppa-mir-20
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-20

Accession MIMAT0002683
Description Pan paniscus ppa-miR-20 mature miRNA
Sequence 8 - UAAAGUGCUUAUAGUGCAGGUA - 29
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24