miRBase entry: ppa-mir-92a-1

Stem-loop ppa-mir-92a-1


Accession
MI0002988
Description
Pan paniscus ppa-mir-92a-1 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

cuuucuacacagguugggaucgguugcaaugcuguguuucuguauggUAUUGCACUUGUCCCGGCCUGUugaguuugg
....((..((((((((((((.(((.(((((((((((......)))))))))))))).))))))))))))..)).....

Structure
-cuuu  ac            c   u           uu 
     cu  acagguugggau ggu gcaaugcugug  u
     ||  |||||||||||| ||| |||||||||||   
     ga  UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu  gu            U   -           gu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr13: 91708037-91708114 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppa-mir-92a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-92a

Accession MIMAT0002685
Description Pan paniscus ppa-miR-92a mature miRNA
Sequence 48 - UAUUGCACUUGUCCCGGCCUGU - 69
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24