miRBase entry: lla-mir-17

Stem-loop lla-mir-17


Accession
MI0003013
Description
Lagothrix lagotricha lla-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauaugugcaucuACUGCAGUGAAGGCACUUGUagcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure
    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Unknown

Database links

Mature lla-miR-17-5p

Accession MIMAT0002714
Description Lagothrix lagotricha lla-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence not_experimental

Mature lla-miR-17-3p

Accession MIMAT0002715
Description Lagothrix lagotricha lla-miR-17-3p mature miRNA
Sequence 51 - ACUGCAGUGAAGGCACUUGU - 70
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24