miRBase entry: ppy-mir-215

Stem-loop ppy-mir-215

Accession

MI0003029

Description

Pongo pygmaeus ppy-mir-215 precursor miRNA

Gene family

MIPF0000063; mir-192

Sequence

aucauucagaaaugguauacaggaaaAUGACCUAUGAAUUGACAGACaauacagcugaguuugucugucauuucuuuaggccaauauucuguacaacugugcuacuucaa
........(((.((((((((((((...((.((((.(((.((((((((((.((......)))))))))))).)))..)))).))...))))))......)))))).)))..

Structure

aucauuca   a      ------      aaA  A    -U   U          u  ag 
        gaa ugguau      acagga   UG CCUA  GAA UGACAGACaa ac  c
        ||| ||||||      ||||||   || ||||  ||| |||||||||| ||   
        cuu aucgug      ugucuu   ac ggau  cuu acugucuguu ug  u
------aa   c      ucaaca      aua  c    uu   u          -  ag

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 29611880-29611989 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-215

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-215

Accession	MIMAT0002732
Description	Pongo pygmaeus ppy-miR-215 mature miRNA
Sequence	27 - AUGACCUAUGAAUUGACAGAC - 47
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24