miRBase entry: ppa-mir-27a

Stem-loop ppa-mir-27a

Accession

MI0003041

Description

Pan paniscus ppa-mir-27a precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

cugaggagcagggcuuagcugcuugugagcaggguccacaccaagucgugUUCACAGUGGCUAAGUUCCGCCccccag
(((.((.((.(((((((((((((.(((((((.((.(........))).)))))))))))))))))))).)).)).)))

Structure

   a  a  a             u       g  u cac 
cug gg gc gggcuuagcugcu gugagca gg c   a
||| || || ||||||||||||| ||||||| || |    
gac cc CG CUUGAAUCGGUGA CACUUgu cu g   c
   c  C  C             -       g  - aac

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 14130483-14130560 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppa-mir-27a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-27a

Accession	MIMAT0002744
Description	Pan paniscus ppa-miR-27a mature miRNA
Sequence	51 - UUCACAGUGGCUAAGUUCCGCC - 72
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24