miRBase entry: ppa-mir-25

Stem-loop ppa-mir-25


Accession
MI0003066
Description
Pan paniscus ppa-mir-25 precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

ggccaguguugagaggcggagacuugggcaauugcuggacgcugcccugggCAUUGCACUUGUCUCGGUCUGAcagugccggcc
((((.((((((..((((.(((((..(.(((((..((((........))))..))))).)..))))).))))..)))))).))))

Structure
    a      ag    g     uu g     ug    acg 
ggcc guguug  aggc gagac  g gcaau  cugg   c
|||| ||||||  |||| |||||  | |||||  ||||    
ccgg cgugac  UCUG CUCUG  C CGUUA  gguc   u
    c      AG    G     UU A     Cg    ccg 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr7: 105562369-105562452 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppa-mir-25
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-25

Accession MIMAT0002765
Description Pan paniscus ppa-miR-25 mature miRNA
Sequence 52 - CAUUGCACUUGUCUCGGUCUGA - 73
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24